Software

• ScanNet (Webserver, GitHub) an interpretable geometric deep learning model for structure-based binding site prediction

• PGM (GitHub), a high-level, object-oriented Python implementation of directed and undirected Probabilistic Graphical Models such as Restricted Boltzmann Machines (RBM), Boltzmann Machines (BM), Mixture of Independent (MoI), Generalized Linear Models (GLM).

• Blind Sparse Deconvolution (BSD, GitHub), a Matlab software for inferring neural spike trains from fluorescence recordings.